Churchill 1000 Genomes Phase 1 Allelic Frequency Results

Churchill was used to analyze the Phase 1 data from the 1000 Genomes Project. Allelic frequencies (AF) were calculated and placed in the INFO field of the VCF. Genotypes were stripped out to reduce file size. Details on Churchill and the analysis of the 1000 Genomes Phase 1 dataset can be found in our manuscript which is currently in submission.

An Annovar-formatted database file and index was prepared for easy integration of Churchill’s 1000 Genomes results in to your variant annotations. Please see Annovar’s website for more information on how to incorporate this data in to your Annovar annotations.

Results Downloads

VCF (genotypes stripped) of Churchill’s Phase 1 results

Annovar-formatted database file for allelic frequencies of Churchill’s Phase 1 results